Where apps hide your files
Drop a PDF into Books and it vanishes from your files into a container. Here is where it went.
~/Library/Containers/com.apple.BKAgentService/Data/Documents/iBooks/Books
Every EPUB and PDF added to Books lands there, renamed to numeric IDs, tracked by a database in the same folder. Inside ~/Library, so invisible to Spotlight.
Adding a PDF to Books copies it into the container. People then delete the original, believing it is "in Books" — which it is, in a folder they cannot see, under a name they cannot recognise, excluded from every search. It is the single best example of macOS making a file effectively disappear while keeping it.
Books offers no Export. The working options:
DRM-free EPUBs
and check the file with file since the names are unhelpful
ls -lt ~/Library/Containers/com.apple.BKAgentService/Data/Documents/iBooks/Books | head
Books purchased from Apple carry DRM — the files exist in the container but only Books can open them. This is licensing, not file management.
Keep PDFs you care about in your own folders and open them in Preview; reserve Books for reading purchased titles and things you are content to leave inside it. If you want Books' reading experience without surrendering the file, keep your copy and add a duplicate.
In a container: ~/Library/Containers/com.apple.BKAgentService/Data/Documents/iBooks/Books, renamed and database-tracked.
Drag it from the Books window to the Desktop, or copy it from the container folder.
Everywhere keeps track of every file on your Mac — including the folders Spotlight hides and drives you have unplugged. Free for a day, then $19 once.
Download for Mac